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1NXD

Crystal structure of MnMn Concanavalin A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE BW7B
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineBW7B
Temperature [K]100
Detector technologyAREA DETECTOR
DetectorMARRESEARCH
Wavelength(s)0.8423
Spacegroup nameC 2 2 21
Unit cell lengths101.300, 118.000, 249.500
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.000 - 1.900
Rwork0.184
R-free0.20100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1nls
RMSD bond length0.007
RMSD bond angle1.700
Data scaling softwareXDS
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.000

*

2.000
High resolution limit [Å]1.900

*

1.900

*

Rmerge0.020

*

0.048

*

Total number of observations324343

*

Number of reflections111379

*

15414

*

<I/σ(I)>34.616.71
Completeness [%]94.9

*

93

*

Redundancy2.882.57
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Gel Acupuncture Method (GAME)8293PEG 6000, Sodium Chloride, Calcium Chloride, Manganese Chloride, Sodium Azide, Tris-HCl , pH 8, Gel Acupuncture Method (GAME), temperature 293K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
101reservoir200 (mM)
111reservoir1 (mM)
121reservoir1 (mM)
131reservoir3 (mM)
21dropTris-HCl100 (mM)pH8.0
31drop200 (mM)
41drop1 (mM)
51drop1 (mM)
61drop3 (mM)
71dropheptakis(6-S-beta-D-galactopyranosyl-6-thio)-cyclomaltoheptaose4.2 (mM)
81reservoirPEG600012 (%(w/v))
91reservoirTris-HCl100 (mM)pH8.0

226707

PDB entries from 2024-10-30

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