1NXD
Crystal structure of MnMn Concanavalin A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE BW7B |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | BW7B |
Temperature [K] | 100 |
Detector technology | AREA DETECTOR |
Detector | MARRESEARCH |
Wavelength(s) | 0.8423 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 101.300, 118.000, 249.500 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.000 - 1.900 |
Rwork | 0.184 |
R-free | 0.20100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1nls |
RMSD bond length | 0.007 |
RMSD bond angle | 1.700 |
Data scaling software | XDS |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.000 * | 2.000 |
High resolution limit [Å] | 1.900 * | 1.900 * |
Rmerge | 0.020 * | 0.048 * |
Total number of observations | 324343 * | |
Number of reflections | 111379 * | 15414 * |
<I/σ(I)> | 34.6 | 16.71 |
Completeness [%] | 94.9 * | 93 * |
Redundancy | 2.88 | 2.57 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Gel Acupuncture Method (GAME) | 8 | 293 | PEG 6000, Sodium Chloride, Calcium Chloride, Manganese Chloride, Sodium Azide, Tris-HCl , pH 8, Gel Acupuncture Method (GAME), temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
10 | 1 | reservoir | 200 (mM) | ||
11 | 1 | reservoir | 1 (mM) | ||
12 | 1 | reservoir | 1 (mM) | ||
13 | 1 | reservoir | 3 (mM) | ||
2 | 1 | drop | Tris-HCl | 100 (mM) | pH8.0 |
3 | 1 | drop | 200 (mM) | ||
4 | 1 | drop | 1 (mM) | ||
5 | 1 | drop | 1 (mM) | ||
6 | 1 | drop | 3 (mM) | ||
7 | 1 | drop | heptakis(6-S-beta-D-galactopyranosyl-6-thio)-cyclomaltoheptaose | 4.2 (mM) | |
8 | 1 | reservoir | PEG6000 | 12 (%(w/v)) | |
9 | 1 | reservoir | Tris-HCl | 100 (mM) | pH8.0 |