1NUG
Role of Calcium Ions in the Activation and Activity of the Transglutaminase 3 Enzyme (2 calciums, 1 Mg, inactive form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2002-08-22 |
Detector | RIGAKU RAXIS IIC |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 57.510, 66.810, 116.530 |
Unit cell angles | 97.24, 90.28, 98.36 |
Refinement procedure
Resolution | 25.000 * - 2.400 |
Rwork | 0.194 |
R-free | 0.24800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1l9n |
RMSD bond length | 0.006 |
RMSD bond angle | 1.300 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 * | 2.550 |
High resolution limit [Å] | 2.400 | 2.400 |
Total number of observations | 495285 * | |
Number of reflections | 65766 | |
Completeness [%] | 98.3 * | 97.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 * | 21 * | 100 mM NaCl, 100 mM NaHEPES (pH 7.5) 4-8% Peg 4K, VAPOR DIFFUSION, HANGING DROP, temperature 288K |
1 | VAPOR DIFFUSION, HANGING DROP | 8 * | 21 * | 100 mM NaCl, 100 mM NaHEPES (pH 7.5) 4-8% Peg 4K, VAPOR DIFFUSION, HANGING DROP, temperature 288K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
10 | 1 | reservoir | sodium HEPES | 100 (mM) | pH7.5 |
11 | 1 | reservoir | PEG4000 | 4-8 (%(w/v)) | |
2 | 1 | drop | beta-octylglucoside | 0.1 (mM) | |
3 | 1 | drop | Tris-HCl | 20 (mM) | pH8.0 |
4 | 1 | drop | EDTA | 1 (mM) | |
5 | 1 | drop | 125 (mM) | ||
6 | 1 | drop | 0.5 (mM) | ||
7 | 1 | drop | 1.5 (mM) | ||
8 | 1 | drop | ATP | 1 (mM) | |
9 | 1 | reservoir | 100 (mM) |