Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NUG

Role of Calcium Ions in the Activation and Activity of the Transglutaminase 3 Enzyme (2 calciums, 1 Mg, inactive form)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2002-08-22
DetectorRIGAKU RAXIS IIC
Wavelength(s)1.5418
Spacegroup nameP 1
Unit cell lengths57.510, 66.810, 116.530
Unit cell angles97.24, 90.28, 98.36
Refinement procedure
Resolution25.000

*

- 2.400
Rwork0.194
R-free0.24800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1l9n
RMSD bond length0.006
RMSD bond angle1.300
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.000

*

2.550
High resolution limit [Å]2.4002.400
Total number of observations495285

*

Number of reflections65766
Completeness [%]98.3

*

97.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8

*

21

*

100 mM NaCl, 100 mM NaHEPES (pH 7.5) 4-8% Peg 4K, VAPOR DIFFUSION, HANGING DROP, temperature 288K
1VAPOR DIFFUSION, HANGING DROP8

*

21

*

100 mM NaCl, 100 mM NaHEPES (pH 7.5) 4-8% Peg 4K, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
101reservoirsodium HEPES100 (mM)pH7.5
111reservoirPEG40004-8 (%(w/v))
21dropbeta-octylglucoside0.1 (mM)
31dropTris-HCl20 (mM)pH8.0
41dropEDTA1 (mM)
51drop125 (mM)
61drop0.5 (mM)
71drop1.5 (mM)
81dropATP1 (mM)
91reservoir100 (mM)

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon