1NTG
Crystal Structure of the EMAP II-like Cytokine Released from human tyrosyl-tRNA Synthetase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | SIEMENS |
Temperature [K] | 100 |
Detector technology | AREA DETECTOR |
Collection date | 2001-10-30 |
Detector | MARRESEARCH |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 54.621, 59.515, 71.591 |
Unit cell angles | 103.51, 109.95, 101.52 |
Refinement procedure
Resolution | 20.000 - 2.200 * |
Rwork | 0.251 |
R-free | 0.29600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | EMAP II structure (PDB 1FL0) |
RMSD bond length | 0.006 |
RMSD bond angle | 1.540 |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.290 |
High resolution limit [Å] | 2.200 * | 2.210 |
Rmerge | 0.067 | 0.252 |
Number of reflections | 39281 | |
<I/σ(I)> | 3.8 | |
Completeness [%] | 94.6 | 83.7 |
Redundancy | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.9 | 4 * | ammonium sulfate, Sodium phosphate mono-basic, potassium phosphate di-basic, acetone, pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 279K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | ammonium sulfate | 2.8 (M) | |
2 | 1 | reservoir | sodium potassium phosphate | 0.1 (M) | pH6.9 |
3 | 1 | reservoir | acetone | 2 (%) |