1NTE
CRYSTAL STRUCTURE ANALYSIS OF THE SECOND PDZ DOMAIN OF SYNTENIN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X9B |
Synchrotron site | NSLS |
Beamline | X9B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2002-06-14 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.97946 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 25.292, 42.570, 31.038 |
Unit cell angles | 90.00, 108.71, 90.00 |
Refinement procedure
Resolution | 12.160 - 1.240 |
R-factor | 0.11533 |
Rwork | 0.113 |
R-free | 0.15300 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1n99 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.630 * |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC (5.1.24) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 13.000 * | |
High resolution limit [Å] | 1.100 | 1.100 * |
Rmerge | 0.042 | 0.170 * |
Total number of observations | 58393 * | |
Number of reflections | 18559 | 275 * |
<I/σ(I)> | 28.5 | |
Completeness [%] | 73.3 | 11 * |
Redundancy | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 294 | PEG 4000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 294K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 8 (mg/ml) | |
2 | 1 | reservoir | HEPES | 0.1 (M) | pH7.0 |
3 | 1 | reservoir | PEG4000 | 34 (%) |