Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NRG

Structure and Properties of Recombinant Human Pyridoxine-5'-Phosphate Oxidase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2002-10-16
DetectorRIGAKU RAXIS II
Wavelength(s)1.5418
Spacegroup nameP 31 2 1
Unit cell lengths82.747, 82.747, 59.327
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.700 - 1.950
R-factor0.192
Rwork0.192
R-free0.25200

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)E. coli PNPOx structure PDB code 1G79
RMSD bond length0.014
RMSD bond angle24.100

*

Data reduction softwarebioteX
Data scaling softwarebioteX
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]71.000

*

2.000
High resolution limit [Å]1.9501.950
Rmerge0.0650.366
Total number of observations94811

*

Number of reflections169661226

*

<I/σ(I)>14.71.63
Completeness [%]94.995.8
Redundancy5.593.87
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5298potassium/sodium tartarate, potassium phosphate, 2-mercaptoethanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein15 (mg/ml)
21droppotassium sodium tartrate tetrahydrate0.35 (M)
31dropPLP4.2 (mM)
41drop2-mercaptoethanol2.5 (mM)
51droppotassium phosphate50 (mM)pH7.5
61reservoirpotassium sodium tartrate tetrahydrate0.7 (M)

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon