1NRG
Structure and Properties of Recombinant Human Pyridoxine-5'-Phosphate Oxidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2002-10-16 |
Detector | RIGAKU RAXIS II |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 82.747, 82.747, 59.327 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.700 - 1.950 |
R-factor | 0.192 |
Rwork | 0.192 |
R-free | 0.25200 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | E. coli PNPOx structure PDB code 1G79 |
RMSD bond length | 0.014 |
RMSD bond angle | 24.100 * |
Data reduction software | bioteX |
Data scaling software | bioteX |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 71.000 * | 2.000 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.065 | 0.366 |
Total number of observations | 94811 * | |
Number of reflections | 16966 | 1226 * |
<I/σ(I)> | 14.7 | 1.63 |
Completeness [%] | 94.9 | 95.8 |
Redundancy | 5.59 | 3.87 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | potassium/sodium tartarate, potassium phosphate, 2-mercaptoethanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 15 (mg/ml) | |
2 | 1 | drop | potassium sodium tartrate tetrahydrate | 0.35 (M) | |
3 | 1 | drop | PLP | 4.2 (mM) | |
4 | 1 | drop | 2-mercaptoethanol | 2.5 (mM) | |
5 | 1 | drop | potassium phosphate | 50 (mM) | pH7.5 |
6 | 1 | reservoir | potassium sodium tartrate tetrahydrate | 0.7 (M) |