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1NPK

REFINED X-RAY STRUCTURE OF DICTYOSTELIUM NUCLEOSIDE DIPHOSPHATE KINASE AT 1,8 ANGSTROMS RESOLUTION

Experimental procedure
Spacegroup nameP 63 2 2
Unit cell lengths74.200, 74.200, 105.140
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution8.000 - 1.800
R-factor0.196
Rwork0.196
RMSD bond length0.013
RMSD bond angle1.280
Phasing softwareX-PLOR
Refinement softwareX-PLOR
Data quality characteristics
 OverallOuter shell
High resolution limit [Å]1.800

*

1.800

*

Rmerge0.067

*

0.350

*

Total number of observations57800

*

Number of reflections14427

*

Completeness [%]93.5

*

84

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

8

*

18

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropPEG60005 (%)
21drop20 (mM)
31dropTris-HCl50 (mM)
41reservoirPEG600010 (%)
51reservoirTris-HCl50 (mM)

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PDB entries from 2024-07-24

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