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1NN3

Crystal structure of human thymidylate kinase with d4TMP + ADP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE X11
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineX11
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorMARRESEARCH
Wavelength(s)0.9076
Spacegroup nameP 43 21 2
Unit cell lengths101.004, 101.004, 49.840
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.700 - 1.550
Rwork0.185
R-free0.22500
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.010

*

RMSD bond angle1.500

*

Data reduction softwareXDS
Data scaling softwareXDS
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.7001.600
High resolution limit [Å]1.5501.550
Rmerge0.0420.322

*

Total number of observations165795

*

Number of reflections37349
<I/σ(I)>40.38.5
Completeness [%]98.496.8
Redundancy4.44
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP829315-20% PEG 3350, 100 mM Tris/HCl, pH 8.0, 5% filtered dead sea water, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein2 (mM)
21dropADP2 (mM)

222036

PDB entries from 2024-07-03

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