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1NKO

Energetic and structural basis of sialylated oligosaccharide recognition by the natural killer cell inhibitory receptor p75/AIRM1 or Siglec-7

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]100
Detector technologyCCD
Collection date2000-05-20
DetectorADSC QUANTUM 4
Wavelength(s)0.9
Spacegroup nameP 1 21 1
Unit cell lengths32.461, 49.715, 39.787
Unit cell angles90.00, 113.08, 90.00
Refinement procedure
Resolution15.000

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- 1.450
R-factor0.277
Rwork0.277
R-free0.21800

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Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1qfo
RMSD bond length0.010

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RMSD bond angle1.640

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]15.00015.000
High resolution limit [Å]1.4501.450
Rmerge0.060

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0.388

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Total number of observations238401

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Number of reflections20819

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Completeness [%]89.3

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68.6

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Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

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5.5

*

277

*

Dimasi, N., (2003) Acta Crystallogr., D59, 1856.

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein3 (mg/ml)
21dropMES25 (mM)pH5.5
31reservoirPEG800020 (%(w/v))
41reservoir0.2 (M)
51reservoirphosphate-citrate0.1 (M)pH4.2

218853

PDB entries from 2024-04-24

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