1NKO
Energetic and structural basis of sialylated oligosaccharide recognition by the natural killer cell inhibitory receptor p75/AIRM1 or Siglec-7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2000-05-20 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.9 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 32.461, 49.715, 39.787 |
Unit cell angles | 90.00, 113.08, 90.00 |
Refinement procedure
Resolution | 15.000 * - 1.450 |
R-factor | 0.277 |
Rwork | 0.277 |
R-free | 0.21800 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1qfo |
RMSD bond length | 0.010 * |
RMSD bond angle | 1.640 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 15.000 | 15.000 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.060 * | 0.388 * |
Total number of observations | 238401 * | |
Number of reflections | 20819 * | |
Completeness [%] | 89.3 * | 68.6 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 5.5 * | 277 * | Dimasi, N., (2003) Acta Crystallogr., D59, 1856. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 3 (mg/ml) | |
2 | 1 | drop | MES | 25 (mM) | pH5.5 |
3 | 1 | reservoir | PEG8000 | 20 (%(w/v)) | |
4 | 1 | reservoir | 0.2 (M) | ||
5 | 1 | reservoir | phosphate-citrate | 0.1 (M) | pH4.2 |