Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NKK

COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHIBITOR

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2002-04-09
DetectorCUSTOM-MADE
Wavelength(s)0.97799
Spacegroup nameP 21 21 2
Unit cell lengths105.170, 215.250, 52.330
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000

*

- 2.600
R-factor0.233
Rwork0.233
R-free0.28000
Structure solution methodCOMO
RMSD bond length0.007
RMSD bond angle23.200

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCOMO
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.590
High resolution limit [Å]2.600

*

2.500
Rmerge0.099

*

Total number of observations103436

*

Number of reflections38225
Completeness [%]91.082.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP721

*

PEG 4000, HEPES, EDTA, Sodium Chloride, Sodium Sulfate, DTT, Spermine_HCl, Glycerol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein7 (mg/ml)
101reservoirglycerol10-12 (%)
111reservoir0.3 (M)
121reservoirspermine-HCl5 (mM)
131reservoirdithiothreitol2 (mM)
141reservoirEDTA2 (mM)
21dropHEPES20 (mM)pH7.0
31drop80 (mM)
41drop40 (mM)
51dropdithiothreitol2 (mM)
61dropEDTA2 (mM)
71dropDMF2 (mM)
81reservoirPEG400016-18 (%)
91reservoirHEPES0.1 (M)pH7.0

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon