Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NKE

A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A CYTOSINE-THYMINE MISMATCH AFTER A SINGLE ROUND OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-C
Synchrotron siteAPS
Beamline14-BM-C
Temperature [K]100
Detector technologyCCD
Collection date2002-04-02
DetectorADSC QUANTUM 4
Wavelength(s)0.9000
Spacegroup nameP 21 21 21
Unit cell lengths88.294, 94.322, 105.685
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000

*

- 1.800
R-factor0.235
Rwork0.216
R-free0.24800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2bdp
RMSD bond length0.006
RMSD bond angle22.200

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.000

*

1.860
High resolution limit [Å]1.8001.800
Rmerge0.064

*

0.474

*

Total number of observations446710

*

Number of reflections80698
<I/σ(I)>21.92.5
Completeness [%]97.895.2
Redundancy5.44.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.8290Johnson, S.J., (2003) Proc.Natl.Acad.Sci.USA, 100, 3895.

*

Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111AMMONIUM SULFATE
211MAGNESIUM SULFATE
311MPD
411MES
511water
612AMMONIUM SULFATE
712MAGNESIUM SULFATE
812MPD
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein12 (mg/ml)
21reservoirammonium sulfate49 (%sat)
31reservoir2.5 (%(v/v))
41reservoir100 (mM)pH5.8
51reservoir10 (mM)

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon