1NKC
A BACILLUS DNA POLYMERASE I PRODUCT COMPLEX BOUND TO A GUANINE-THYMINE MISMATCH AFTER FIVE ROUNDS OF PRIMER EXTENSION, FOLLOWING INCORPORATION OF DCTP, DGTP, DTTP, AND DATP.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1998-06-10 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.802, 93.491, 105.475 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 * - 1.800 |
R-factor | 0.2 |
Rwork | 0.186 |
R-free | 0.21800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2bdp |
RMSD bond length | 0.005 |
RMSD bond angle | 22.800 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 * | 1.860 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.042 * | 0.136 * |
Total number of observations | 209950 * | |
Number of reflections | 62356 | |
<I/σ(I)> | 31.1 | 4.6 |
Completeness [%] | 76.7 | 16.8 |
Redundancy | 3.4 | 1.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.8 | 290 | Johnson, S.J., (2003) Proc.Natl.Acad.Sci.USA, 100, 3895. * |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | AMMONIUM SULFATE | ||
2 | 1 | 1 | MAGNESIUM SULFATE | ||
3 | 1 | 1 | MPD | ||
4 | 1 | 1 | MES | ||
5 | 1 | 1 | water | ||
6 | 1 | 2 | AMMONIUM SULFATE | ||
7 | 1 | 2 | MAGNESIUM SULFATE | ||
8 | 1 | 2 | MPD |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 12 (mg/ml) | |
2 | 1 | reservoir | ammonium sulfate | 49 (%sat) | |
3 | 1 | reservoir | 2.5 (%(v/v)) | ||
4 | 1 | reservoir | 100 (mM) | pH5.8 | |
5 | 1 | reservoir | 10 (mM) |