Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NI9

2.0 A structure of glycerol metabolism protein from E. coli

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2002-04-22
DetectorCUSTOM-MADE
Wavelength(s)0.9793, 0.9795
Spacegroup nameP 41 21 2
Unit cell lengths61.453, 61.453, 171.740
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.000

*

- 2.100

*

R-factor0.18934
Rwork0.187
R-free0.25000

*

Structure solution methodMAD
RMSD bond length0.018

*

RMSD bond angle1.430

*

Data reduction softwared*TREK
Data scaling softwareHKL-2000
Phasing softwareSOLVE
Refinement softwareREFMAC (5.1.24)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.000
High resolution limit [Å]2.100

*

2.100

*

Rmerge0.073

*

0.525

*

Number of reflections22955
Completeness [%]99.8

*

98.1

*

Redundancy9.2

*

8.0

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

4.4

*

21

*

1Vapor diffusion, hanging drop

*

4.4

*

21

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG80007 (%)
21reservoirammonium sulfate0.2 (M)
31reservoirsodium acetate0.1 (M)pH4.4

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon