1NDM
Crystal structure of Fab fragment of antibody HyHEL-26 complexed with lysozyme
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Detector technology | IMAGE PLATE |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 90.680, 164.020, 40.000 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 100.000 * - 2.100 |
R-factor | 0.2081 |
Rwork | 0.208 |
R-free | 0.26200 * |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 * |
RMSD bond angle | 26.400 * |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
High resolution limit [Å] | 2.100 | 2.000 * |
Rmerge | 0.086 * | 0.208 * |
Total number of observations | 84092 * | |
Number of reflections | 31484 | |
Completeness [%] | 90.0 * | 82.3 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 * | VAPOR DIFFUSION, HANGING DROP |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 5-10 (mg/ml) | |
2 | 1 | reservoir | PEG4000 | 14 (%(w/v)) | |
3 | 1 | reservoir | ammonium acetate | 100 (mM) | |
4 | 1 | reservoir | sodium acetate | 50 (mM) | pH5.0 |