1NDK
X-RAY STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE
Experimental procedure
Spacegroup name | P 63 2 2 |
Unit cell lengths | 72.700, 72.700, 107.500 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 7.000 * - 2.200 |
R-factor | 0.203 |
Rwork | 0.203 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.300 |
Phasing software | X-PLOR |
Refinement software | X-PLOR |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 20.000 * |
High resolution limit [Å] | 2.200 * |
Rmerge | 0.046 * |
Total number of observations | 82562 * |
Number of reflections | 9012 * |
Completeness [%] | 99.3 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 7.2 * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 5-10 (mg/ml) | |
2 | 1 | drop | Tris-HCl | 30 (mM) | |
3 | 1 | drop | ammonium sulfate | 1 (M) | |
4 | 1 | drop | 20 (mM) | ||
5 | 1 | drop | dithiothreitol | 1 (mM) | |
6 | 1 | reservoir | ammonium sulfate | 2 (M) |