1NDG
Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X12B |
Synchrotron site | NSLS |
Beamline | X12B |
Detector technology | CCD |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 89.870, 89.870, 148.963 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 100.000 * - 1.900 |
R-factor | 0.2061 |
Rwork | 0.206 |
R-free | 0.25400 * |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 1.400 * |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.320 | |
High resolution limit [Å] | 1.900 | 1.800 * |
Rmerge | 0.053 * | 0.300 * |
Total number of observations | 403172 * | |
Number of reflections | 46465 * | |
Completeness [%] | 95.0 * | 80.7 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | VAPOR DIFFUSION, HANGING DROP |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 5-10 (mg/ml) | |
2 | 1 | reservoir | PEG8000 | 20 (%(w/v)) | |
3 | 1 | reservoir | 50 (mM) | ||
4 | 1 | reservoir | sodium acetate | 100 (mM) | pH4.6 |