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1NDG

Crystal structure of Fab fragment of antibody HyHEL-8 complexed with its antigen lysozyme

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X12B
Synchrotron siteNSLS
BeamlineX12B
Detector technologyCCD
Spacegroup nameP 42 21 2
Unit cell lengths89.870, 89.870, 148.963
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution100.000

*

- 1.900
R-factor0.2061
Rwork0.206
R-free0.25400

*

Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle1.400

*

Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]33.320
High resolution limit [Å]1.9001.800

*

Rmerge0.053

*

0.300

*

Total number of observations403172

*

Number of reflections46465

*

Completeness [%]95.0

*

80.7

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROPVAPOR DIFFUSION, HANGING DROP
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein5-10 (mg/ml)
21reservoirPEG800020 (%(w/v))
31reservoir50 (mM)
41reservoirsodium acetate100 (mM)pH4.6

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PDB entries from 2024-04-24

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