1MGR
Crystal structure of RNase Sa3,cytotoxic microbial ribonuclease
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE BW7A |
Synchrotron site | EMBL/DESY, Hamburg |
Beamline | BW7A |
Temperature [K] | 293 |
Detector technology | IMAGE PLATE |
Collection date | 1996-11-27 |
Detector | MARRESEARCH |
Wavelength(s) | 0.900 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 34.050, 34.050, 147.220 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 1.700 |
R-factor | 0.186 |
Rwork | 0.185 |
R-free | 0.22400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1rgg |
RMSD bond length | 0.020 |
RMSD bond angle | 1.783 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.710 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.036 | 0.119 |
Number of reflections | 10355 | |
<I/σ(I)> | 47.6 | 14 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.9 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.2 | 293 | sodium acetate, calcium acetate, acetic acid, MPD, ammonium sulphate, pH 4.2, VAPOR DIFFUSION, HANGING DROP at 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | MPD | 10 (%(v/v)) | |
2 | 1 | reservoir | ammonium sulfate | 40 (mM) | |
3 | 1 | drop | sodium acetate | 20 (mM) | pH4.2 |
4 | 1 | drop | calcium acetate | 2 (mM) | |
5 | 1 | drop | protein | 10 (mg/ml) | |
6 | 1 | drop | MPD | 5 (%(v/v)) | |
7 | 1 | drop | ammonium sulfate | 20 (mM) |