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1MA8

A-DNA decamer GCGTA(UMS)ACGC with incorporated 2'-methylseleno-uridine

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Temperature [K]100
Detector technologyCCD
Collection date2001-05-30
DetectorMARRESEARCH
Spacegroup nameP 21 21 21
Unit cell lengths24.555, 43.967, 45.340
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution10.000 - 1.300
R-factor0.154

*

Rwork0.149
R-free0.17300
Structure solution methodMAD
RMSD bond length0.015
RMSD bond angle0.023
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.350
High resolution limit [Å]1.3001.300
Rmerge0.049

*

0.263

*

Number of reflections23332
Completeness [%]99.8100
Redundancy6.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7298MPD, spermine tetrahydrochloride, potassium chloride, sodium chloride, sodium cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111MPD
211spermine tetrahydrochloride
311KCl
411NaCl
511sodium cacodylate
612MPD
712NaCl
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropDNA solution2 (mM)
21dropsodium cacodylate40 (mM)pH7.0
31drop12 (mM)
41drop80 (mM)
51dropspermine tetrahydrochloride12 (mM)
61drop10 (%(v/v))
71reservoirMPD35 (%(v/v))

225946

PDB entries from 2024-10-09

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