1MA8
A-DNA decamer GCGTA(UMS)ACGC with incorporated 2'-methylseleno-uridine
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 5ID-B |
Synchrotron site | APS |
Beamline | 5ID-B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-05-30 |
Detector | MARRESEARCH |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 24.555, 43.967, 45.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 10.000 - 1.300 |
R-factor | 0.154 * |
Rwork | 0.149 |
R-free | 0.17300 |
Structure solution method | MAD |
RMSD bond length | 0.015 |
RMSD bond angle | 0.023 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.350 |
High resolution limit [Å] | 1.300 | 1.300 |
Rmerge | 0.049 * | 0.263 * |
Number of reflections | 23332 | |
Completeness [%] | 99.8 | 100 |
Redundancy | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | MPD, spermine tetrahydrochloride, potassium chloride, sodium chloride, sodium cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | MPD | ||
2 | 1 | 1 | spermine tetrahydrochloride | ||
3 | 1 | 1 | KCl | ||
4 | 1 | 1 | NaCl | ||
5 | 1 | 1 | sodium cacodylate | ||
6 | 1 | 2 | MPD | ||
7 | 1 | 2 | NaCl |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | DNA solution | 2 (mM) | |
2 | 1 | drop | sodium cacodylate | 40 (mM) | pH7.0 |
3 | 1 | drop | 12 (mM) | ||
4 | 1 | drop | 80 (mM) | ||
5 | 1 | drop | spermine tetrahydrochloride | 12 (mM) | |
6 | 1 | drop | 10 (%(v/v)) | ||
7 | 1 | reservoir | MPD | 35 (%(v/v)) |