1MA8
A-DNA decamer GCGTA(UMS)ACGC with incorporated 2'-methylseleno-uridine
Experimental procedure
| Experimental method | MAD |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 5ID-B |
| Synchrotron site | APS |
| Beamline | 5ID-B |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2001-05-30 |
| Detector | MARRESEARCH |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 24.555, 43.967, 45.340 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 10.000 - 1.300 |
| R-factor | 0.154 * |
| Rwork | 0.149 |
| R-free | 0.17300 |
| Structure solution method | MAD |
| RMSD bond length | 0.015 |
| RMSD bond angle | 0.023 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | CNS |
| Refinement software | SHELXL-97 |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 20.000 | 1.350 |
| High resolution limit [Å] | 1.300 | 1.300 |
| Rmerge | 0.049 * | 0.263 * |
| Number of reflections | 23332 | |
| Completeness [%] | 99.8 | 100 |
| Redundancy | 6.9 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | MPD, spermine tetrahydrochloride, potassium chloride, sodium chloride, sodium cacodylate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | MPD | ||
| 2 | 1 | 1 | spermine tetrahydrochloride | ||
| 3 | 1 | 1 | KCl | ||
| 4 | 1 | 1 | NaCl | ||
| 5 | 1 | 1 | sodium cacodylate | ||
| 6 | 1 | 2 | MPD | ||
| 7 | 1 | 2 | NaCl |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | drop | DNA solution | 2 (mM) | |
| 2 | 1 | drop | sodium cacodylate | 40 (mM) | pH7.0 |
| 3 | 1 | drop | 12 (mM) | ||
| 4 | 1 | drop | 80 (mM) | ||
| 5 | 1 | drop | spermine tetrahydrochloride | 12 (mM) | |
| 6 | 1 | drop | 10 (%(v/v)) | ||
| 7 | 1 | reservoir | MPD | 35 (%(v/v)) |






