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1M9S

Crystal structure of Internalin B (InlB), a Listeria monocytogenes virulence protein containing SH3-like domains.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]110
Detector technologyCCD
Collection date2000-11-21
DetectorSBC-2
Wavelength(s)1.8455, 1.8461, 1.722
Spacegroup nameC 2 2 21
Unit cell lengths48.500, 330.900, 182.400
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 2.650
R-factor0.274
Rwork0.273
R-free0.30200
Structure solution methodMAD
RMSD bond length0.006
RMSD bond angle24.743

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSOLVE
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.740
High resolution limit [Å]2.6502.650
Rmerge0.0810.561
Number of reflections37423
<I/σ(I)>14.41.53
Completeness [%]86.359
Redundancy4.2

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5298lithium sulfate, glycerol, dithiothreitol, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
1VAPOR DIFFUSION, HANGING DROP6.5298lithium sulfate, glycerol, dithiothreitol, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
1VAPOR DIFFUSION, HANGING DROP6.5298lithium sulfate, glycerol, dithiothreitol, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoir1.9 (M)
21reservoirglycerol10 (%)
31reservoirdithiothreitol1 (mM)
41reservoirMES100 (mM)pH6.5

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PDB entries from 2024-10-30

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