1M9S
Crystal structure of Internalin B (InlB), a Listeria monocytogenes virulence protein containing SH3-like domains.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2000-11-21 |
Detector | SBC-2 |
Wavelength(s) | 1.8455, 1.8461, 1.722 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 48.500, 330.900, 182.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.650 |
R-factor | 0.274 |
Rwork | 0.273 |
R-free | 0.30200 |
Structure solution method | MAD |
RMSD bond length | 0.006 |
RMSD bond angle | 24.743 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SOLVE |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.740 |
High resolution limit [Å] | 2.650 | 2.650 |
Rmerge | 0.081 | 0.561 |
Number of reflections | 37423 | |
<I/σ(I)> | 14.4 | 1.53 |
Completeness [%] | 86.3 | 59 |
Redundancy | 4.2 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | lithium sulfate, glycerol, dithiothreitol, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | lithium sulfate, glycerol, dithiothreitol, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | lithium sulfate, glycerol, dithiothreitol, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | 1.9 (M) | ||
2 | 1 | reservoir | glycerol | 10 (%) | |
3 | 1 | reservoir | dithiothreitol | 1 (mM) | |
4 | 1 | reservoir | MES | 100 (mM) | pH6.5 |