1M5S
Formylmethanofuran:tetrahydromethanopterin fromyltransferase from Methanosarcina barkeri
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MPG/DESY, HAMBURG BEAMLINE BW6 |
Synchrotron site | MPG/DESY, HAMBURG |
Beamline | BW6 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Detector | MARRESEARCH |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 127.100, 83.800, 126.400 |
Unit cell angles | 90.00, 108.40, 90.00 |
Refinement procedure
Resolution | 30.000 * - 1.900* |
R-factor | 0.197 |
Rwork | 0.197 |
R-free | 0.24800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Formylmethanofuran:tetrahydromethanopterin formyltransferase from Methanopyrus kandleri |
RMSD bond length | 0.007 |
RMSD bond angle | 26.400 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (0.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.920 |
High resolution limit [Å] | 1.900 * | 1.880 * |
Rmerge | 0.037 * | 0.081 * |
Total number of observations | 215926 * | |
Number of reflections | 99960 | |
Completeness [%] | 94.0 | 84.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 * | 4 * | MPD, sodium citrate, ammonium acetate, HEPES, formylmethanofuran, pH 6.7, VAPOR DIFFUSION, HANGING DROP at 277K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 15 (mg/ml) | |
2 | 1 | drop | MOPS | 10 (mM) | pH7.0 |
3 | 1 | reservoir | sodium citrate | 0.1 (M) | |
4 | 1 | reservoir | ammonium acetate | 0.2 (M) | |
5 | 1 | reservoir | MPD | 31 (%) | |
6 | 1 | reservoir | HEPES | 0.1 (M) | pH6.7 |
7 | 1 | reservoir | formylmethanofuran | 5.0 (mM) |