1LV2
Hepatocyte Nuclear Factor 4 is a Transcription Factor that Constitutively Binds Fatty Acids
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2000-06-05 |
Detector | MARRESEARCH |
Wavelength(s) | 1.0 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 152.708, 152.708, 93.421 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 * - 2.700 |
R-factor | 0.247 |
Rwork | 0.245 |
R-free | 0.26800 * |
Structure solution method | SIRAS |
Starting model (for MR) | Built by fitting pieces of secondary structure into density. |
RMSD bond length | 0.009 * |
RMSD bond angle | 1.675 * |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SHARP |
Refinement software | CNS (2000) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 * | 2.800 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.048 | 0.320 * |
Total number of observations | 1308098 * | |
Number of reflections | 18866 * | |
<I/σ(I)> | 36.3 | 3.5 |
Completeness [%] | 98.4 * | 93.7 * |
Redundancy | 15.8 | 15.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 8 * | 294 | ammonium phosphate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 21K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 30 (mg/ml) | |
2 | 1 | drop | Tris | 10 (mM) | pH8.0 |
3 | 1 | drop | EDTA | 0.1 (mM) | |
4 | 1 | drop | 150 (mM) | ||
5 | 1 | drop | dithiothreitol | 10 (mM) | |
6 | 1 | drop | propane-diol | 5 (%) | |
7 | 1 | reservoir | ammonium dihydrogen phosphate/diammonium hydrogen phosphate | 0.75 (M) | pH5.0 |
8 | 1 | reservoir | dithiothreitol | 10 (mM) |