1LNH
LIPOXYGENASE-3(SOYBEAN) NON-HEME FE(II) METALLOPROTEIN
Experimental procedure
Source type | ROTATING ANODE |
Temperature [K] | 296 |
Detector technology | IMAGE PLATE |
Collection date | 1994 |
Detector | RIGAKU |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 112.800, 137.400, 61.850 |
Unit cell angles | 90.00, 95.50, 90.00 |
Refinement procedure
Resolution | 8.000 - 2.600 |
R-factor | 0.174 |
Rwork | 0.174 |
R-free | 0.26500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | FOR MOLECULAR REPLACEMENT: 1SBL FOR SOYBEAN LIPOXYGENASE-1. THE MODEL WAS TRUNCATED TO INCLUDE ONLY THE ATOMS (7854) COMMON WITH LIPOXYGENASE-3 SEQUENCE (ENTRY 1SBL WAS REPLACED LATER IN PDB BY 2SBL WITH BETTER REFINED MODEL). |
RMSD bond length | 0.015 |
RMSD bond angle | 25.460 * |
Data reduction software | MSC |
Phasing software | X-PLOR (3.1) |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.600 | 2.750 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.062 | 0.117 |
Total number of observations | 74331 * | |
Number of reflections | 23403 | |
<I/σ(I)> | 3.39 | |
Completeness [%] | 80.1 | 48 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, sitting drop * | 5.3 | 23 * | pH 5.3 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop1 | L3 | 10 (mg/ml) | |
2 | 1 | drop1 | Tris-HCl | 0.1 (M) | pH7.0 |
3 | 1 | drop2 | PEG8000 | 20 (%(w/v)) | |
4 | 1 | drop2 | sodium citrate phosphate | 0.05 (M) | pH4.6 |
5 | 1 | drop2 | 0.2 (%(w/v)) | ||
6 | 1 | drop3 | sodium phosphate | 0.1 (M) | pH7.0 |
7 | 1 | drop4 | water | ||
8 | 1 | reservoir | PEG8000 | 20 (%) |