Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1LME

Crystal Structure of Peptide Deformylase from Thermotoga maritima

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.3
Synchrotron siteALS
Beamline5.0.3
Temperature [K]100
Detector technologyCCD
Collection date2002-01-08
DetectorADSC QUANTUM 4
Spacegroup nameP 32 2 1
Unit cell lengths65.048, 65.048, 151.371
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution50.000

*

- 2.200
R-factor0.198
Rwork0.198
R-free0.24900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1bs4
RMSD bond length0.010
RMSD bond angle24.400

*

Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.000

*

2.340
High resolution limit [Å]2.2002.200
Rmerge0.075

*

0.327

*

Number of reflections19503
<I/σ(I)>10.8
Completeness [%]99.6

*

98.8

*

Redundancy7.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.920

*

PEG 3350, potassium nitrate, pH 6.9, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoirPEG335020 (%(w/v))
21reservoirpotassium nitrate0.2 (M)pH6.9

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon