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1LAJ

The Structure of Tomato Aspermy Virus by X-Ray Crystallography

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X12B
Synchrotron siteNSLS
BeamlineX12B
Temperature [K]298
Detector technologyIMAGE PLATE
Collection date1997-04-01
DetectorMARRESEARCH
Wavelength(s)1.15000
Spacegroup nameI 2 2 2
Unit cell lengths294.296, 327.393, 382.066
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 3.400
Rwork0.218
R-free0.22800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1f15
RMSD bond length0.009
RMSD bond angle29.300

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareX-PLOR
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.7203.460
High resolution limit [Å]3.4003.400
Rmerge0.230
Total number of observations1444765

*

Number of reflections156468
<I/σ(I)>7.9
Completeness [%]62.0

*

2.2
Redundancy1.522
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.518

*

14-17% Ethanol, 100mM tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
1VAPOR DIFFUSION, SITTING DROP8.518

*

14-17% Ethanol, 100mM tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein14 (mg/ml)pH8.5
21dropethanol14-17 (%)
31dropTris100 (mM)
41reservoirTris100 (mM)pH8.5
51reservoirMPD20 (%)
61reservoirethanol10 (%)
71reservoirsodium azide0.04 (%)

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PDB entries from 2024-07-17

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