Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1KVX

CARBOXYLIC ESTER HYDROLASE, SINGLE MUTANT D99A OF BOVINE PANCREATIC PLA2, 1.9 A ORTHORHOMBIC FORM

Experimental procedure
Source typeROTATING ANODE
Source detailsRIGAKU R-AXIS II
Temperature [K]291
Detector technologyIMAGE PLATE
Collection date1996-10-28
DetectorRIGAKU RAXIS IIC
Spacegroup nameP 21 21 21
Unit cell lengths46.560, 64.570, 37.990
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution10.000 - 1.900
R-factor0.2
Rwork0.200
R-free0.31300
Structure solution methodTHE HIGH RESOLUTION ATOMIC COORDINATES OF THE ORTHORHOMBIC FORM OF THE RECOMBINANT ENZYME (PDB ENTRY 1UNE) WERE USED AS THE STARTING MODEL FOR THE REFINEMENT.
Starting model (for MR)WILD TYPE PDB ENTRY 1UNE
RMSD bond length0.011
RMSD bond angle22.200

*

Data reduction softwareR-AXIS (IIC)
Data scaling softwareR-AXIS (II)
Phasing softwareX-PLOR (3.1)
Refinement softwareX-PLOR (3.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]10.0001.990
High resolution limit [Å]1.9001.900
Rmerge0.0670.192
Total number of observations20534

*

Number of reflections8110
Completeness [%]86.083
Redundancy2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.2291

*

CRYSTALS WERE GROWN BY CO-CRYSTALLIZATION BY THE HANGING DROP VAPOR DIFFUSION METHOD USING THE CONDITIONS 5 (MICRO)L OF THE PROTEIN (15 MG/ML OF THE PROTEIN), 5MM CACL2, 50MM TRIS BUFFER, PH 7.2 AND 2.0 (MICRO)L OF 50% MPD IN THE DROPLET. THE RESERVOIR CONTAINED (75%) OF MPD., vapor diffusion - hanging drop
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein11 (mg/ml)
21dropTris7.9 (mM)
31drop3.6 (mM)
41dropMPD14 (%)
51reservoirMPD75 (%)

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon