Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1KKH

Crystal Structure of the Methanococcus jannaschii Mevalonate Kinase

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-D
Synchrotron siteAPS
Beamline14-BM-D
Temperature [K]121
Detector technologyCCD
Collection date2001-03-07
DetectorADSC QUANTUM 4
Wavelength(s)0.9611, 0.9792, 0.9794, 0.9919
Spacegroup nameP 1 21 1
Unit cell lengths56.138, 44.028, 64.845
Unit cell angles90.00, 102.71, 90.00
Refinement procedure
Resolution19.900

*

- 2.400
R-factor0.2

*

Rwork0.200
R-free0.28000

*

Structure solution methodMAD
RMSD bond length0.012
RMSD bond angle1.622

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSOLVE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]99.000

*

2.490
High resolution limit [Å]2.4002.400
Rmerge0.061

*

0.126

*

Number of reflections11633
Completeness [%]96.279.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP816

*

Dioxane, Tris, DTT, magnesium, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 289.15K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10-15 (mg/ml)
21dropTris5 (mM)
31dropdithiothreitol10 (mM)pH8.0
41reservoirdioxane28 (%)
51reservoirdithiothreitol10 (mM)

243911

PDB entries from 2025-10-29

PDB statisticsPDBj update infoContact PDBjnumon