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1KJM

TAP-A-associated rat MHC class I molecule

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL7-1
Synchrotron siteSSRL
BeamlineBL7-1
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1999-04-04
DetectorMARRESEARCH
Wavelength(s)1.08
Spacegroup nameP 21 21 2
Unit cell lengths110.049, 109.566, 45.300
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.800 - 2.350
R-factor0.24935
Rwork0.247
R-free0.26800

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Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ED3 MOLECULE 1
RMSD bond length0.010

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RMSD bond angle1.520

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareREFMAC (5.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.8002.430
High resolution limit [Å]2.3502.350
Rmerge0.080

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0.423

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Number of reflections223132120

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<I/σ(I)>12.71.86
Completeness [%]94.992
Redundancy2.8

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2.4

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Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.517

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2M (NH4)2SO4, 1% glycerol, 0.1 M Tris/HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein15 (mg/ml)
21reservoirammonium sulfate2 (M)
31reservoirglycerol1 (%(v/v))
41reservoirTris-HCl0.1 (M)p8.5

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PDB entries from 2024-09-18

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