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1KI9

Adenylate kinase from Methanococcus thermolithotrophicus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1999-02-14
DetectorRIGAKU RAXIS IV
Wavelength(s)1.5418
Spacegroup nameP 4 21 2
Unit cell lengths128.500, 128.500, 88.500
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.780 - 2.760
R-factor0.2041
Rwork0.204
R-free0.28700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1nks
RMSD bond length0.007
RMSD bond angle20.700

*

Data reduction softwared*TREK
Data scaling softwared*TREK
Phasing softwareAMoRE
Refinement softwareCNS (0.9)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.000
High resolution limit [Å]2.760

*

2.760

*

Rmerge0.060

*

0.175

*

Number of reflections25623
Completeness [%]95.1

*

94.4

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.6

*

298PEG 6000, MPD, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP at 298K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein15 (mg/ml)
21dropAMP3 (mM)
31dropADP3 (mM)
41reservoirHEPES0.1 (M)pH4.6
51reservoirPEG600010 (%(w/v))
61reservoirMPD5 (%(v/v))

246031

PDB entries from 2025-12-10

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