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1KD7

Crystal structure of an extracellular domain fragment of human BAFF

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2000-12-12
DetectorRIGAKU RAXIS IV
Wavelength(s)1.5418
Spacegroup nameP 65
Unit cell lengths121.720, 121.720, 160.740
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.000 - 2.800
R-factor0.222
Rwork0.217
R-free0.25400

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Structure solution methodMIR
RMSD bond length0.008

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RMSD bond angle1.440

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSOLVE
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.900
High resolution limit [Å]2.8002.800
Rmerge0.0790.267
Number of reflections31743
<I/σ(I)>14.22.9
Completeness [%]95.681.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7

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4

*

8% PEG 4000, 0.1 M sodium acetatesolution of 8% PEG 4000, 0.1 M sodium acetate pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
1VAPOR DIFFUSION, HANGING DROP7

*

4

*

8% PEG 4000, 0.1 M sodium acetatesolution of 8% PEG 4000, 0.1 M sodium acetate pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein9 (mg/ml)
21dropsodium phosphate150 (mM)pH7.
31drop150 (mM)
41reservoirPEG40008 (%(w/v))
51reservoirsodium acetate0.1 (M)pH4.5

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PDB entries from 2024-08-28

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