1KD3
The Crystal Structure of r(GGUCACAGCCC)2, Thallium form
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU |
| Temperature [K] | 98 |
| Detector technology | IMAGE PLATE |
| Collection date | 2000-05-31 |
| Detector | RIGAKU RAXIS IIC |
| Wavelength(s) | 1.5418 |
| Spacegroup name | P 43 |
| Unit cell lengths | 44.232, 44.232, 49.870 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 21.720 - 1.800 |
| R-factor | 0.215 |
| Rwork | 0.215 |
| R-free | 0.24100 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | metal free r(GGUCACAGCCC)2 |
| RMSD bond length | 0.004 |
| RMSD bond angle | 11.100 * |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | CNS |
| Refinement software | CNS |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 99.000 | 1.830 |
| High resolution limit [Å] | 1.800 | 1.800 |
| Rmerge | 0.067 * | 0.510 |
| Number of reflections | 9195 * | |
| <I/σ(I)> | 28.7 | 3.7 |
| Completeness [%] | 99.6 * | 99.1 * |
| Redundancy | 4.33 * | 9.3 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | Vapor diffusion * | 7 * | 293 | 50 mM tris HCl (pH 6.4), 1.4 M (NH4)2SO4, 20 mM MgCl2, 18 mM spermine, neomycin B, pH 6.4, VAPOR DIFFUSION, HANGING DROP at 293K |
Crystallization Reagents
| ID | crystal ID | solution ID | reagent name | concentration | details |
| 1 | 1 | 1 | tris HCl | ||
| 2 | 1 | 1 | (NH4)2SO4 | ||
| 3 | 1 | 1 | MgCl2 | ||
| 4 | 1 | 1 | spermine | ||
| 5 | 1 | 1 | neomycin B | ||
| 6 | 1 | 2 | tris HCl | ||
| 7 | 1 | 2 | (NH4)2SO4 | ||
| 8 | 1 | 2 | MgCl2 | ||
| 9 | 1 | 2 | spermine |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | reservoir | cacodylate | 40 (mM) | pH6.5 |
| 2 | 1 | reservoir | ammonium sulfate | 1.4 (M) | |
| 3 | 1 | reservoir | spermine | 12 (mM) | |
| 4 | 1 | reservoir | thallium acetate | 80 (mM) | |
| 5 | 1 | drop | protein | 4 (mg/ml) | |
| 6 | 1 | drop | Tris-HCl | 10 (mM) | pH7.0 |
| 7 | 1 | drop | 5 (mM) |






