1K79
Ets-1(331-440)+GGAA duplex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2001-02-06 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 93.740, 74.580, 79.140 |
Unit cell angles | 90.00, 116.14, 90.00 |
Refinement procedure
Resolution | 17.100 * - 2.400 |
R-factor | 0.228 * |
Rwork | 0.224 |
R-free | 0.27500 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Ets-1(331-440) bound to DNA from the Pax5(1-149)+Ets-1(331-440)+DNA complex |
RMSD bond length | 0.007 |
RMSD bond angle | 1.150 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 17.050 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.061 | 0.278 |
Number of reflections | 17326 | |
<I/σ(I)> | 18.7 | 2.7 |
Completeness [%] | 89.9 | 58.7 |
Redundancy | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 1.4M-1.6M Sodium Citrate, 100mM Hepes, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | sodium citrate | ||
2 | 1 | 1 | Hepes |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | DNA | 0.5 (mM) | |
2 | 1 | reservoir | sodium citrate | 1.4-1.6 (M) | |
3 | 1 | reservoir | HEPES | 100 (mM) | pH6.5 |