1K1S
Crystal Structure of DinB from Sulfolobus solfataricus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-07-26 |
Detector | BRANDEIS - B4 |
Wavelength(s) | 1.1 |
Spacegroup name | P 62 |
Unit cell lengths | 113.040, 113.040, 62.580 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.000 - 2.800 |
R-factor | 0.237 * |
Rwork | 0.237 |
R-free | 0.27900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1im4 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.900 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.000 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.080 | 0.501 |
Number of reflections | 11002 | |
<I/σ(I)> | 20.1 | 4.7 |
Completeness [%] | 99.9 | 100 |
Redundancy | 7.1 | 7.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 298 | Peg2000, sodium cacodylate, sodium fluoride, magnesium chloride, sucrose monolaurate, dATP, DNA hairpin (5' TTTTTTTTTTAGATGTCGATGCAATCGACATCT* 3' terminated by 3'deoxythymine ), pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | PEG2000 | 20 (%(w/v)) | |
10 | 1 | reservoir | glycerol | 40 (%(v/v)) | |
2 | 1 | drop | sodium cacodylate | 0.1 (M) | |
3 | 1 | drop | 0.2 (M) | ||
4 | 1 | drop | 5 (mM) | ||
5 | 1 | drop | sucrose monolaurate | 0.2 (mM) | |
6 | 1 | reservoir | PEG2000 | 10 (%(v/v)) | |
7 | 1 | reservoir | sodium cacodylate | 50 (mM) | |
8 | 1 | reservoir | 0.1 (M) | ||
9 | 1 | reservoir | 5 (mM) |