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1JZY

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-4
Synchrotron siteESRF
BeamlineID14-4
Temperature [K]90
Detector technologyCCD
Collection date2001-04-01
DetectorADSC QUANTUM 4
Wavelength(s)0.9393
Spacegroup nameI 2 2 2
Unit cell lengths169.200, 410.000, 695.000
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 3.500
R-factor0.268

*

Rwork0.268
R-free0.30100
Structure solution methodFOURIER SYNTHESIS
RMSD bond length0.003
RMSD bond angle0.670
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0003.600
High resolution limit [Å]3.5003.500
Rmerge0.122

*

0.458

*

Number of reflections244074
Completeness [%]79.571.4
Redundancy5.4

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion

*

7.8291ethanol, dimethylhexanediol, MgCl2, KCl, Hepes, NH4Cl, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111ethanol
211dimethylhexanediol
311MgCl2
411KCl
511Hepes
611NH4Cl
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoir10 (mM)
21reservoir60 (mM)
31reservoir5 (mM)
41reservoirHEPES10 (mM)

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PDB entries from 2024-03-27

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