Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1JYR

Xray Structure of Grb2 SH2 Domain Complexed with a Phosphorylated Peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE X31
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineX31
Temperature [K]290
Collection date1999-06-21
Wavelength(s)1.057
Spacegroup nameP 41 21 2
Unit cell lengths50.800, 50.800, 89.440
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution8.000 - 1.550
R-factor0.19

*

Rwork0.190
R-free0.22800
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.035
RMSD bond angle25.700

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
High resolution limit [Å]1.550
Rmerge0.052

*

0.370

*

Total number of observations155449

*

Number of reflections17213

*

Completeness [%]99.799.3

*

Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1unknown

*

6291ammonium phosphate, PEG400, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
111ammonium phosphate2 (M)
211PEG4004 (%(w/v))
311sodium cacodylate50 (mM)pH6.0
411protein46 (mg/ml)
511TFA0.1 (%(v/v))in water

237992

PDB entries from 2025-06-25

PDB statisticsPDBj update infoContact PDBjnumon