1JY8
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2001-04-02 |
Detector | MARRESEARCH |
Spacegroup name | I 21 3 |
Unit cell lengths | 144.630, 144.630, 144.630 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.000 * - 2.500 |
R-factor | 0.201 * |
Rwork | 0.201 |
R-free | 0.25500 |
Structure solution method | MIR |
RMSD bond length | 0.009 |
RMSD bond angle | 22.400 * |
Data reduction software | MOSFLM |
Data scaling software | CCP4 ((SCALA)) |
Phasing software | MLPHARE |
Refinement software | X-PLOR (3.851) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.640 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.063 | 0.409 |
Total number of observations | 66701 * | |
Number of reflections | 17106 | |
Completeness [%] | 98.1 | 99.8 |
Redundancy | 3.9 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | unknown * | 7 | 293 | 2 M Na-formate, 0.1 M HEPES/ NaOH, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | 1 | protein | 10 (mg/ml) | |
2 | 1 | 1 | potassium phosphate | 20 (mM) | pH7.0 |
3 | 1 | 2 | ammonium formate | 2.0 (M) | |
4 | 1 | 2 | HEPES-NaOH | 100 (mM) | pH7.0 |