1JWF
Crystal Structure of human GGA1 VHS domain.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-6B |
Synchrotron site | Photon Factory |
Beamline | BL-6B |
Temperature [K] | 293 |
Detector technology | IMAGE PLATE |
Collection date | 2001-05-29 |
Detector | FUJI |
Wavelength(s) | 1.0 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 55.120, 55.120, 105.513 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 15.000 - 2.100 |
R-factor | 0.22337 |
Rwork | 0.222 |
R-free | 0.26137 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.557 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC (5.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 15.000 | 2.170 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.044 * | |
Total number of observations | 39125 * | |
Number of reflections | 9580 * | |
Completeness [%] | 95.6 | 89.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 * | 293 | PEG 3350, potassium dihydrogen phosphate, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | Tris-HCl | 1 (mM) | pH8.0 |
2 | 1 | drop | protein | 10 (mg/ml) | |
3 | 1 | reservoir | PEG3350 | 17 (%(w/v)) | |
4 | 1 | reservoir | potassium phosphate | 0.2 (M) | |
5 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH7.5 |