1JNI
Structure of the NapB subunit of the periplasmic nitrate reductase from Haemophilus influenzae.
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID13 |
Synchrotron site | ESRF |
Beamline | ID13 |
Temperature [K] | 173 |
Detector technology | CCD |
Collection date | 2000-08-14 |
Detector | MARRESEARCH |
Wavelength(s) | 0.9640 |
Spacegroup name | P 4 21 2 |
Unit cell lengths | 78.752, 78.752, 29.047 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 10.000 - 1.250 |
R-factor | 0.1596 |
Rwork | 0.170 |
R-free | 0.21650 * |
Structure solution method | MAD |
RMSD bond length | 0.013 * |
RMSD bond angle | 2.500 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MLPHARE |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 10.000 | 1.300 |
High resolution limit [Å] | 1.250 * | 1.250 * |
Rmerge | 0.089 | 0.316 |
Total number of observations | 214619 * | |
Number of reflections | 22337 | |
<I/σ(I)> | 17 | 1.37 |
Completeness [%] | 84.4 | 65.47 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 * | 277 * | Brige, A., (2001) Acta Crystallogr, D57, 418. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 20 (mg/ml) | |
2 | 1 | reservoir | PEG8000 | 20 (%) | |
3 | 1 | reservoir | magnesium acetate tetrahydrate | 0.2 (M) | |
4 | 1 | reservoir | sodium cacodylate | 0.1 (M) | pH6.5 |
5 | 1 | reservoir | potassium sodium tartrate tetrahydrate | 0.8 (M) | |
6 | 1 | reservoir | sodium HEPES | 0.1 (M) | pH7.5 |