1JL5
Novel Molecular Architecture of YopM-a Leucine-rich Effector Protein from Yersinia pestis
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | NSLS BEAMLINE X9B |
| Synchrotron site | NSLS |
| Beamline | X9B |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2001-01-01 |
| Detector | ADSC QUANTUM 4 |
| Wavelength(s) | 0.971 |
| Spacegroup name | I 41 2 2 |
| Unit cell lengths | 149.430, 149.430, 191.180 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 70.890 - 2.100 |
| R-factor | 0.22 |
| Rwork | 0.220 |
| R-free | 0.24000 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1g9u |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.700 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | AMoRE |
| Refinement software | CNS (0.9) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.150 |
| High resolution limit [Å] | 2.100 | 2.100 |
| Rmerge | 0.040 | 0.230 |
| Number of reflections | 58456 | |
| <I/σ(I)> | 25.2 | 4.2 |
| Completeness [%] | 97.3 | 92.1 * |
| Redundancy | 4.9 | 3.3 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | Vapor diffusion * | 6 | 300 | Evdokimov, A.G., (2000) Acta Crystallog., D56, 1676. * |
Crystallization Reagents in Literatures
| ID | crystal ID | solution | reagent name | concentration (unit) | details |
| 1 | 1 | reservoir | 2-propanol | 10 (%) | |
| 2 | 1 | reservoir | 450 (mM) | ||
| 3 | 1 | reservoir | sodium-MES | 100 (mM) | |
| 4 | 1 | reservoir | ethylene glycol | 20 (%) | |
| 5 | 1 | drop | protein | 6-8 (mg/ml) |
