1JFZ
Crystal Structure of MN(II)-Complex of RNAse III Endonuclease Domain from Aquifex Aeolicus at 2.10 Angstrom Resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X9B |
Synchrotron site | NSLS |
Beamline | X9B |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-03-21 |
Detector | ADSC QUANTUM 4 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 49.741, 140.549, 49.759 |
Unit cell angles | 90.00, 117.42, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.100 |
R-factor | 0.191 * |
Rwork | 0.195 |
R-free | 0.27700 * |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ID 1I4S |
RMSD bond length | 0.005 |
RMSD bond angle | 0.018 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.059 | 0.185 |
Total number of observations | 72740 * | |
Number of reflections | 33591 | |
<I/σ(I)> | 10.3132 | 2.985 |
Completeness [%] | 92.9 | 74.7 |
Redundancy | 2.165 | 2.023 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 * | 18-20 * | PEG4000, TRIS-HCL, ACETATE, CHLORIDE, pH 8.50, VAPOR DIFFUSION, HANGING DROP, temperature 292K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 13 (mg/ml) | |
2 | 1 | drop | 0.6 (M) | ||
3 | 1 | drop | Tris-HCl | 25 (mM) | pH7.5 |
4 | 1 | reservoir | PEG4000 | 30 (%(w/v)) | |
5 | 1 | reservoir | sodium acetate | 0.2 (M) | |
6 | 1 | reservoir | Tris-HCl | 0.1 (M) | pH8.5 |