Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1JFZ

Crystal Structure of MN(II)-Complex of RNAse III Endonuclease Domain from Aquifex Aeolicus at 2.10 Angstrom Resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X9B
Synchrotron siteNSLS
BeamlineX9B
Temperature [K]100
Detector technologyCCD
Collection date2001-03-21
DetectorADSC QUANTUM 4
Spacegroup nameP 1 21 1
Unit cell lengths49.741, 140.549, 49.759
Unit cell angles90.00, 117.42, 90.00
Refinement procedure
Resolution30.000 - 2.100
R-factor0.191

*

Rwork0.195
R-free0.27700

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB ID 1I4S
RMSD bond length0.005
RMSD bond angle0.018
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.180
High resolution limit [Å]2.1002.100
Rmerge0.0590.185
Total number of observations72740

*

Number of reflections33591
<I/σ(I)>10.31322.985
Completeness [%]92.974.7
Redundancy2.1652.023
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5

*

18-20

*

PEG4000, TRIS-HCL, ACETATE, CHLORIDE, pH 8.50, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein13 (mg/ml)
21drop0.6 (M)
31dropTris-HCl25 (mM)pH7.5
41reservoirPEG400030 (%(w/v))
51reservoirsodium acetate0.2 (M)
61reservoirTris-HCl0.1 (M)pH8.5

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon