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1J5E

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Replaces:  1FJF
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2000-06-02
DetectorSBC-2
Spacegroup nameP 41 21 2
Unit cell lengths401.375, 401.375, 175.887
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution99.000

*

- 3.050
R-factor0.208

*

Rwork0.208
R-free0.25200
Structure solution methodMIRAS
RMSD bond length0.006
RMSD bond angle28.510

*

Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareSOLVE
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]59.7613.160
High resolution limit [Å]3.0503.050
Rmerge0.108

*

0.490

*

Total number of observations840101

*

Number of reflections254610
<I/σ(I)>8.11.4
Completeness [%]94.081.7

*

Redundancy2.72.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5

*

4

*

Trakhanov, S.D., (1987) FEBS Lett., 220, 319.

*

1VAPOR DIFFUSION, HANGING DROP7.5

*

4

*

Trakhanov, S.D., (1987) FEBS Lett., 220, 319.

*

Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111NH4Cl
1012magnesium acetate
1112sodium cacodylate
1212MPD
211KCl
311CaCl2
411magnesium acetate
511sodium cacodylate
611MPD
712NH4Cl
812KCl
912CaCl2
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11reservoir250 (mM)
101drop75 (mM)
111drop200 (mM)
121drop10 (%)
21reservoir75 (mM)
31reservoir25 (mM)
41reservoir2-mercaptoethanol6 (mM)
51reservoirpotassium cacodylate0.1 (M)or 0.1M MES
61reservoir13-17 (%)
71dropprotein10 (mg/ml)
81dropTris-HCl20 (mM)
91drop25 (mM)

218853

PDB entries from 2024-04-24

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