1IS1
Crystal structure of ribosome recycling factor from Vibrio parahaemolyticus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-6A |
Synchrotron site | Photon Factory |
Beamline | BL-6A |
Temperature [K] | 100 |
Detector technology | DIFFRACTOMETER |
Detector | WEISSENBERG |
Wavelength(s) | 1.000 |
Spacegroup name | H 3 2 |
Unit cell lengths | 84.799, 84.799, 142.727 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 2.200 |
Rwork | 0.203 |
R-free | 0.27300 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 * |
RMSD bond angle | 1.078 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.240 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.073 | 0.251 * |
Total number of observations | 82069 * | |
Number of reflections | 10326 | |
Completeness [%] | 99.6 | 93.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 4 * | PEG 8000, sodium acetate, GDP, fusidic acid, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 10 (mg/ml) | |
2 | 1 | reservoir | MES/NaOH | 50 (mM) | pH6.2 |
3 | 1 | reservoir | sodium acetate | 200 (mM) | |
4 | 1 | reservoir | PEG8000 | 23-25 (%(w/v)) |