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1IS1

Crystal structure of ribosome recycling factor from Vibrio parahaemolyticus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-6A
Synchrotron sitePhoton Factory
BeamlineBL-6A
Temperature [K]100
Detector technologyDIFFRACTOMETER
DetectorWEISSENBERG
Wavelength(s)1.000
Spacegroup nameH 3 2
Unit cell lengths84.799, 84.799, 142.727
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution20.000 - 2.200
Rwork0.203
R-free0.27300
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005

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RMSD bond angle1.078

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.0002.240
High resolution limit [Å]2.2002.200
Rmerge0.0730.251

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Total number of observations82069

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Number of reflections10326
Completeness [%]99.693.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.24

*

PEG 8000, sodium acetate, GDP, fusidic acid, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21reservoirMES/NaOH50 (mM)pH6.2
31reservoirsodium acetate200 (mM)
41reservoirPEG800023-25 (%(w/v))

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PDB entries from 2024-04-24

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