1HDI
Pig muscle 3-PHOSPHOGLYCERATE KINASE complexed with 3-PG and MgADP.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SRS BEAMLINE PX7.2 |
Synchrotron site | SRS |
Beamline | PX7.2 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 1997-06-15 |
Detector | MARRESEARCH |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.500, 105.200, 35.900 |
Unit cell angles | 90.00, 98.40, 90.00 |
Refinement procedure
Resolution | 20.000 - 1.800 |
R-factor | 0.207 |
Rwork | 0.207 |
R-free | 0.26200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | THE STARTING MODEL WAS CHOSEN AS THE STRUCTURE OF THE MNADP BINARY COMPLEX OF PIG MUSCLE PGK CRYSTALLISED IN THE PRESENCE OF AMMONIUM SULPHATE (MAY ET AL. PERSONAL COMM.). |
RMSD bond length | 0.011 |
RMSD bond angle | 24.700 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | X-PLOR |
Refinement software | X-PLOR (3.8) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.880 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.081 | 0.244 |
Total number of observations | 125740 * | |
Number of reflections | 34292 | |
<I/σ(I)> | 17 | 3 |
Completeness [%] | 95.6 | 98.1 |
Redundancy | 2.4 | 2.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 * | 15 * | THE ENZYME WAS DIALYSED IN 30 MM NAK-PHOSPHATE BUFFER, PH=8.0. SINGLE CRYSTALS WERE GROWN AT 15C WITHIN A FEW WEEKS IN HANGING DROPS (10-15 ML EACH) INITIALLY CONTAINING 1.25 M NAK-PHOSPHATE (PH=8.0), 100 MM 3-PG, 25 MM MGCL2, 20 MM ADP, 10 MM DITHIOTHREITOL, 0.02% NAN3 AND 15 MG/ML PGK. RESERVOIR SOLUTIONS CONTAINED 2.4-2.75 M NAK-PHOSPHATE(PH=8.0)., pH 7.70 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | sodium potassium phosphate | 1.25 (M) | |
2 | 1 | drop | 3-PG | 100 (mM) | |
3 | 1 | drop | 25 (mM) | ||
4 | 1 | drop | ADP | 20 (mM) | |
5 | 1 | drop | dithiothreitol | 10 (mM) | |
6 | 1 | drop | 0.02 (%(w/v)) | ||
7 | 1 | drop | PGK | 15 (mg/ml) | |
8 | 1 | reservoir | sodium potassium phosphate | 2.4-2.75 (M) |