1H8N
Three-dimensional structure of anti-ampicillin single chain Fv fragment from phage-displayed murine antibody libraries
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID2 |
Synchrotron site | ESRF |
Beamline | ID2 |
Temperature [K] | 100 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 61.136, 61.136, 135.646 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 18.000 - 1.870 |
R-factor | 0.233 |
Rwork | 0.233 |
R-free | 0.27600 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 27.700 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (0.5) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.900 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.082 * | 0.275 * |
Total number of observations | 303033 * | |
Number of reflections | 20522 | |
<I/σ(I)> | 2 | |
Completeness [%] | 98.8 | 98.8 * |
Redundancy | 3 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 5.8 * | 20 * | pH 4.50 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 2.85 (mg/ml) | |
2 | 1 | reservoir | ammonium sulfate | 1.9-2.0 (M) | |
3 | 1 | reservoir | sodium acetate | 100 (mM) | pH5.8 |
4 | 1 | reservoir | 1,2,3-heptanetriol | 1.5 (%(v/v)) |