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1GYY

The Crystal Structure of YdcE, a 4-Oxalocrotonate Tautomerase Homologue from Escherichia coli, Confirms the Structural Basis for Oligomer Diversity

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]110
Detector technologyIMAGE PLATE
Collection date2000-10-15
DetectorRIGAKU IMAGE PLATE
Spacegroup nameP 21 21 21
Unit cell lengths44.700, 46.700, 76.200
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.000 - 1.350
Rwork0.151
R-free0.17300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PARTIALLY REFINED 1.5A RESOLUTION NATIVE
RMSD bond length0.009

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RMSD bond angle1.500

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Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0001.390
High resolution limit [Å]1.3501.350
Rmerge0.0370.159

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Total number of observations276503

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Number of reflections36652

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<I/σ(I)>29.54.2
Completeness [%]91.435
Redundancy7.52
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

8.5

*

4

*

PROTEIN: 25MG/ML IN 50MM HEPES, PH 7.3, 4 CELCIUS, SITTING DROP: MIX 15UL PROTEIN WITH 5UL 40% SODIUM CITRATE PH 6.5
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein20 (mg/ml)
21reservoirsodium citrate40 (%(w/v))pH8.5

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PDB entries from 2024-11-06

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