Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1GR3

Structure of the human collagen X NC1 trimer

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RUH3R
Temperature [K]293
Detector technologyIMAGE PLATE
DetectorMARRESEARCH
Spacegroup nameH 3 2
Unit cell lengths78.360, 78.360, 141.036
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution20.000 - 2.000
R-factor0.186
Rwork0.186
R-free0.19900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1c28
RMSD bond length0.007
RMSD bond angle1.400
Data reduction softwareMOSFLM
Data scaling softwareCCP4
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.100
High resolution limit [Å]2.0002.000
Rmerge0.0760.385
Number of reflections11537
<I/σ(I)>13.54.1
Completeness [%]99.9100
Redundancy4.74.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

9.5

*

1.6 M MGSO4, 0.1 M MES PH 6.5
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropglycine-NaOH100 (mM)pH9.5
21drop100 (mM)
31dropCHAPS0.5 (%(w/v))
41dropprotein10 (mg/ml)
51reservoir1.2-1.6 (M)
61reservoirMES- NaOH100 (mM)pH6.5

237992

PDB entries from 2025-06-25

PDB statisticsPDBj update infoContact PDBjnumon