1GR3
Structure of the human collagen X NC1 trimer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RUH3R |
Temperature [K] | 293 |
Detector technology | IMAGE PLATE |
Detector | MARRESEARCH |
Spacegroup name | H 3 2 |
Unit cell lengths | 78.360, 78.360, 141.036 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 2.000 |
R-factor | 0.186 |
Rwork | 0.186 |
R-free | 0.19900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1c28 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.400 |
Data reduction software | MOSFLM |
Data scaling software | CCP4 |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.100 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.076 | 0.385 |
Number of reflections | 11537 | |
<I/σ(I)> | 13.5 | 4.1 |
Completeness [%] | 99.9 | 100 |
Redundancy | 4.7 | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 9.5 * | 1.6 M MGSO4, 0.1 M MES PH 6.5 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | glycine-NaOH | 100 (mM) | pH9.5 |
2 | 1 | drop | 100 (mM) | ||
3 | 1 | drop | CHAPS | 0.5 (%(w/v)) | |
4 | 1 | drop | protein | 10 (mg/ml) | |
5 | 1 | reservoir | 1.2-1.6 (M) | ||
6 | 1 | reservoir | MES- NaOH | 100 (mM) | pH6.5 |