1GPW
Structural evidence for ammonia tunneling across the (beta/alpha)8 barrel of the imidazole glycerol phosphate synthase bienzyme complex.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X11 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X11 |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | X-RAY RESEARCH |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 74.000, 91.900, 131.000 |
Unit cell angles | 90.00, 105.90, 90.00 |
Refinement procedure
Resolution | 30.000 - 2.400 |
R-factor | 0.226 |
Rwork | 0.226 |
R-free | 0.29000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1thf |
RMSD bond length | 0.008 |
RMSD bond angle | 1.500 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.450 |
High resolution limit [Å] | 2.370 | 2.370 |
Rmerge | 0.048 | 0.168 |
Number of reflections | 65356 | 5485 * |
<I/σ(I)> | 28 | 4.5 |
Completeness [%] | 96.7 | 78.8 |
Redundancy | 2.9 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 8 | PROTEIN SOLUTION: 10 MM TRIS (PH 8.0), 1 MM DTT, 1 MM EDTA, 28.8 MG/ML PROTEIN COMPLEX. PRECIPITATE SOLUTION: 15 %[W/V] PEG-8000, 0.9 M AMMONIUM NITRATE, 0.1 M HEPES/HCL (PH 8.5), 10 MM DTT, 5% [V/V] MPD |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | Tris-NaOH | 10 (mM) | pH8.0 |
2 | 1 | drop | 150 (mM) | ||
3 | 1 | drop | EDTA | 1 (mM) | |
4 | 1 | drop | dithiothreitol | 5 (mM) | |
5 | 1 | drop | protein | 12.5 (mg/ml) | |
6 | 1 | reservoir | sodium acetate | 0.1 (M) | pH5.0 |
7 | 1 | reservoir | dithiothreitol | 10 (mM) | |
8 | 1 | reservoir | 15 (mM) | ||
9 | 1 | reservoir | PEG200 | 30 (%(v/v)) |