1G79
X-RAY STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5'-PHOSPHATE OXIDASE COMPLEXED WITH PYRIDOXAL 5'-PHOSPHATE AT 2.0 A RESOLUTION
Experimental procedure
Experimental method | LAUE |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 98 |
Detector technology | IMAGE PLATE |
Collection date | 2000-03-24 |
Detector | RIGAKU RAXIS II |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 63.720, 63.720, 124.360 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 55.000 - 2.000 |
R-factor | 0.2114 |
Rwork | 0.208 |
R-free | 0.22400 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 1dnl |
RMSD bond length | 0.012 |
RMSD bond angle | 22.900 * |
Data reduction software | bioteX |
Data scaling software | bioteX |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.000 | 2.100 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.056 | 0.251 |
Total number of observations | 71938 * | |
Number of reflections | 20202 | 2659 * |
<I/σ(I)> | 12.3 | 3.3 |
Completeness [%] | 98.1 | 97.7 |
Redundancy | 3.5 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 * | 298 | macroseeding * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | reservoir | ammonium sulfate | 0.8-1.1 (M) | |
2 | 1 | reservoir | MES-NaOH | 0.1 (M) | |
3 | 1 | reservoir | dioxane | 5 (%) |