1FZO
MHC CLASS I NATURAL MUTANT H-2KBM8 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | CUSTOM-MADE |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 136.310, 87.350, 45.170 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.900 - 1.800 |
R-factor | 0.197 |
Rwork | 0.197 |
R-free | 0.21100 |
Structure solution method | CNS, done by rigid body refinement of starting model. |
Starting model (for MR) | pdb-entry 2vaa without peptide water and mutated side chains truncated to alanine. |
RMSD bond length | 0.008 |
RMSD bond angle | 25.500 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.900 | 1.820 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.074 | 0.494 |
Number of reflections | 47714 | 1601 * |
<I/σ(I)> | 21.9 | 2.4 |
Completeness [%] | 93.8 | 95.4 |
Redundancy | 4.2 | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.4 | 17 * | K/Na phosphate, MPD , pH 6.40, VAPOR DIFFUSION, SITTING DROP, temperature 290K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 15 (mg/ml) | |
2 | 1 | reservoir | 2.1-2.2 (M) | ||
3 | 1 | reservoir | MPD | 2 (%) |