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1FZO

MHC CLASS I NATURAL MUTANT H-2KBM8 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
DetectorCUSTOM-MADE
Spacegroup nameP 21 21 2
Unit cell lengths136.310, 87.350, 45.170
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.900 - 1.800
R-factor0.197
Rwork0.197
R-free0.21100
Structure solution methodCNS, done by rigid body refinement of starting model.
Starting model (for MR)pdb-entry 2vaa without peptide water and mutated side chains truncated to alanine.
RMSD bond length0.008
RMSD bond angle25.500

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.9001.820
High resolution limit [Å]1.8001.800
Rmerge0.0740.494
Number of reflections477141601

*

<I/σ(I)>21.92.4
Completeness [%]93.895.4
Redundancy4.24.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.417

*

K/Na phosphate, MPD , pH 6.40, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein15 (mg/ml)
21reservoir2.1-2.2 (M)
31reservoirMPD2 (%)

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PDB entries from 2025-06-25

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