1F69
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 298 |
Detector technology | IMAGE PLATE |
Collection date | 1999-01-27 |
Detector | RIGAKU RAXIS IV |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 42.590, 42.590, 63.300 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 8.000 - 2.600 |
R-factor | 0.2134 |
Rwork | 0.205 |
R-free | 0.27900 |
Structure solution method | MOLECULAR REPLACEMENT, REAL SPACE TRANSLATION/ROTATION/RIGID BODY SEARCH USING A CUSTOM X-PLOR 3.851 SCRIPT |
RMSD bond length | 0.005 |
RMSD bond angle | 1.100 |
Data reduction software | d*TREK |
Data scaling software | d*TREK |
Phasing software | X-PLOR |
Refinement software | X-PLOR (3.851) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 500.000 | 2.720 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.061 | 0.251 |
Total number of observations | 20150 * | |
Number of reflections | 2026 | |
<I/σ(I)> | 27 | |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 9.5 | 9.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion * | 6 | 298 | MGCL2, CO(NH3)6, SPERMINE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | MGCL2 | ||
2 | 1 | 1 | CO(NH3)6 | ||
3 | 1 | 1 | SPERMINE | ||
4 | 1 | 1 | SODIUM CACODYLATE | ||
5 | 1 | 2 | MGCL2 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | DNA | 0.7 (mM) | |
2 | 1 | drop | sodium cacodylate | 25 (mM) | |
3 | 1 | drop | 0.8 (mM) | ||
4 | 1 | drop | spermine-tetrahydrochloride | 0.75 (mM) | |
5 | 1 | reservoir | MPD | 15 (%(v/v)) | |
6 | 1 | reservoir | sodium cacodylate | 25 (mM) |