1EKP
CRYSTAL STRUCTURE OF HUMAN BRANCHED CHAIN AMINO ACID AMINOTRANSFERASE (MITOCHONDRIAL) COMPLEXED WITH PYRIDOXAL-5'-PHOSPHATE AT 2.5 ANGSTROMS (MONOCLINIC FORM).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 298 |
Detector technology | IMAGE PLATE |
Collection date | 1997-03-22 |
Detector | RIGAKU RAXIS II |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 59.630, 111.640, 59.900 |
Unit cell angles | 90.00, 95.89, 90.00 |
Refinement procedure
Resolution | 40.650 - 2.500 |
R-factor | 0.166 |
Rwork | 0.155 |
R-free | 0.22000 * |
Starting model (for MR) | E. COLI BRANCHED CHAIN AMINO ACID AMINOTRANSFERASE |
RMSD bond length | 0.008 * |
RMSD bond angle | 1.332 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (0.9) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.650 | 2.540 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.063 | 0.203 |
Number of reflections | 21222 | |
<I/σ(I)> | 13.1 | |
Completeness [%] | 78.6 * | 66.8 |
Redundancy | 2.632 | 1.35 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | PEG1500, DTT, HEPES; NA OR K PHOSPHATE, DTT, HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 2.5 (mg/ml) | |
2 | 1 | drop | HEPES | 50 (mm) | |
3 | 1 | drop | dithiothreitol | 20 (mM) | |
4 | 1 | drop | EDTA | 50 (mM) | |
5 | 1 | reservoir | sodium phosphate | 1.6 (M) | or potassium phosphate |
6 | 1 | reservoir | dithiothreitol | 20 (mM) | |
7 | 1 | reservoir | HEPES | 0.1 (M) |