1EBB
Bacillus stearothermophilus YhfR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2001-01-15 |
Detector | OXFORD |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 55.200, 55.200, 164.430 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 * - 2.300 |
R-factor | 0.23 |
Rwork | 0.230 |
R-free | 0.26300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ENTRIES 1TIP 5PGM +HOMOLOGY MODEL |
RMSD bond length | 0.006 |
RMSD bond angle | 22.400 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | CNS (1.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 * | 2.400 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.109 | 0.706 |
Number of reflections | 11896 | |
<I/σ(I)> | 19.5 | 1.3 |
Completeness [%] | 99.5 | 98.8 |
Redundancy | 12.2 | 11.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 7.4 * | 22 * | 45 % POLYETHYLENE GLYCOL 4,000, 120 MM LITHIUM SULFATE, 20 MM TRIS.HCL BUFFER, PH 8.0 |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 20 (mg/ml) | |
2 | 1 | drop | Tris-HCl | 10 (mM) | pH7.4 |
3 | 1 | drop | dithiothreitol | 1 (mM) | |
4 | 1 | drop | EDTA | 2 (mM) | |
5 | 1 | drop | 150 (mM) | ||
6 | 1 | reservoir | PEG4000 | 45 (%(w/v)) | |
7 | 1 | reservoir | lithium sulfate | 120 (mM) | |
8 | 1 | reservoir | Tris-HCl | 20 (mM) | pH8.0 |