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1EBB

Bacillus stearothermophilus YhfR

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2001-01-15
DetectorOXFORD
Spacegroup nameP 41 21 2
Unit cell lengths55.200, 55.200, 164.430
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000

*

- 2.300
R-factor0.23
Rwork0.230
R-free0.26300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB ENTRIES 1TIP 5PGM +HOMOLOGY MODEL
RMSD bond length0.006
RMSD bond angle22.400

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.000

*

2.400
High resolution limit [Å]2.3002.300
Rmerge0.1090.706
Number of reflections11896
<I/σ(I)>19.51.3
Completeness [%]99.598.8
Redundancy12.211.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, hanging drop

*

7.4

*

22

*

45 % POLYETHYLENE GLYCOL 4,000, 120 MM LITHIUM SULFATE, 20 MM TRIS.HCL BUFFER, PH 8.0
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein20 (mg/ml)
21dropTris-HCl10 (mM)pH7.4
31dropdithiothreitol1 (mM)
41dropEDTA2 (mM)
51drop150 (mM)
61reservoirPEG400045 (%(w/v))
71reservoirlithium sulfate120 (mM)
81reservoirTris-HCl20 (mM)pH8.0

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PDB entries from 2025-06-11

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